---
name: ssaha
version: 3.1c_1
origin: biology/ssaha
comment: Very fast matching and alignment of DNA sequences
arch: freebsd:9:x86:64
www: http://www.sanger.ac.uk/Software/analysis/SSAHA/
maintainer: ports@FreeBSD.org
prefix: /usr/local
licenselogic: single
flatsize: 636922
desc: "SSAHA is a software tool for very fast matching and alignment of DNA\nsequences.
  It stands for Sequence Search and Alignment by Hashing\nAlgorithm. It achieves its
  fast search speed by converting sequence\ninformation into a `hash table' data structure,
  which can then be\nsearched very rapidly for matches.\n\nSSAHA: a fast search method
  for large DNA databases (2001).\nNing Z, Cox AJ, Mullikin JC. Genome Res. 11: 1725-9.
  \nPMID: 11591649\n\nWWW: http://www.sanger.ac.uk/Software/analysis/SSAHA/\n"
categories: [biology]
files:
  /usr/local/bin/ssaha: 048fd2552e292bc7d33651e86d7b546e48ced0785a09ec2fd171fe6a2c62f700
  /usr/local/share/ssaha/README: 0b07445ef259820c7a30e432370d1ebb960ee8d311df4fa0a1ccf947594d6235
  /usr/local/share/ssaha/test.fasta: ba904a728a77066992340371efb3b30a3c462c65e03c766981265a375f15d7a9
  /usr/local/share/ssaha/testSSAHA.csh: 05be89f22fe1901690be079136d58c53feb34450ac461741f0e04ff6f1e63451
  /usr/local/share/ssaha/test_extract.fasta: 23308e530389c5c6ed3416763e9a3bfdb63cfefeb0e1572f91a39a9626e00965
  /usr/local/share/ssaha/test_filter.fail: 4879c5e91db4aeca05fed5beac59db838555f5e1a2ee6ce9e3eea9cbe73da3f7
  /usr/local/share/ssaha/test_filter.fastq: f7c8a477a9fe8d043d521d700ec37915047ec70dc69dcf6569fe639b6ca90288
  /usr/local/share/ssaha/test_protein.fasta: b8be093f309209669827922b9d2719bb417c1d3b69e53d157ca49ea66d0216e8
directories:
  /usr/local/share/ssaha/: y
scripts: {}
